You can always keep the current version you have. As long as there is no security issue in HikaShop, you should be fine.
Otherwise, you can try to install it again after doing a backup and try to do a partial export as I explained in my previous message. That will tell you if it comes from a server limitation, in which case you can contact your hosting compnay in order to increase your limitations.
Otherwise, you could do the update and then, when you do an export, you can do a backup of your website and restore it on your computer in order to do the export there, that should avoid that problem.