There is no option for that yet.
You need to go in the menu Display->Custom fields and create a new custom field of the table "order" and the type "text". That will add the field on your order edition screen so that you will be able to enter a tracking number for the orders in the administration.
Then, you will have to edit the file show of the view order via the menu Display->Views and add the code:
<?php $this->fields = $fieldsClass->getFields('',$null,'order');
if(hikashop::level(2) && !empty($this->fields)){?>
<tr>
<td>
<fieldset class="hikashop_order_custom_fields_fieldset">
<legend><?php echo JText::_('ADDITIONAL_INFORMATION'); ?></legend>
<table class="hikashop_order_custom_fields_table adminlist" cellpadding="1" width="100%">
<?php foreach($this->fields[order] as $fieldName => $oneExtraField) {
?>
<tr class="hikashop_order_custom_field_<?php echo $fieldName;?>_line">
<td class="key">
<?php echo $this->fieldsClass->getFieldName($oneExtraField);?>
</td>
<td>
<?php echo $this->fieldsClass->show($oneExtraField,$this->order->$fieldName); ?>
</td>
</tr>
<?php } ?>
</table>
</fieldset>
</td>
</tr>
<?php } ?>
somewhere where you want in the file (near the end for example ?). That way, the users will see their shipping number once you entered it.