You should already have the line:
echo JText::sprintf('ORDER_CREATION_SUCCESS_ON_WEBSITE_AT_DATE',$url,HIKASHOP_LIVE, hikashop::getDate(time(),'%d %B %Y'), hikashop::getDate(time(),'%H:%M'));?>
in your order creation email which displays the order number in the $url parameter.
For the shipping method, you could try something like this:
$pluginsShipping = hikashop::get('type.plugins');
$pluginsShipping->type='shipping';
$pluginsShipping->order=$data;
$shipping_method = $pluginsShipping->getName($data->order_shipping_method,$data->order_shipping_id);
echo '<tr><td colspan="4" style="text-align:right">'.JText::_('HIKASHOP_SHIPPING_METHOD').' : '.$shipping_method.'</td></tr>';