No. There is no such mechanism in Joomla. If you want to modify the code of a plugin in a way that won't be overwritten during updates of the plugin, the only solution is to make a copy of the plugin and change the name of the plugin. Then, you can disable the one provided by the developer, and use instead your copy, which won't be updated in the future.
However, this does not apply here. You can directly modify the file since we'll add the change on our end for the next version of HikaShop. So no need for an override.
And if you don't know how to do the change, you can just wait for the update of HikaShop, which will include the change. It will be out in June.